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gene-mapper-experimental-base

This project has a lot of business classes to work with genes and related named entities. Genes are part of a GeneDocument and may have gold IDs as well as mapped/predicted IDs. Another large part are species because most (all?) gene ID databases are species specific. So there are also classes or members to represent species mentions and the assignment of species IDs (taxonomy IDs) to genes. There is little to no business logic herein. This project is only useful as building block in other projects dealing with species assignment, gene ID mapping or similar efforts.
BSD-2-Clause
JULIE Lab Jena, Germany
Erik Faessler
named other projects classes part another project taxonomy building gold related members have only block because predicted databases similar mapping business large dealing genes gene work assignment this herein also specific genedocument most with efforts entities species there mentions mapped well logic useful represent little
Files download
File Operation
gene-mapper-experimental-base-1.0.0.jar download
gene-mapper-experimental-base-1.0.0.pom download
gene-mapper-experimental-base-1.0.0-sources.jar download
Apache Maven 
<dependency>
  <groupId>de.julielab</groupId>
  <artifactId>gene-mapper-experimental-base</artifactId>
  <version>1.0.0</version>
</dependency>
Gradle Groovy 
implementation 'de.julielab:gene-mapper-experimental-base:1.0.0'
Gradle Kotlin 
implementation("de.julielab:gene-mapper-experimental-base:1.0.0")
Scala SBT 
libraryDependencies += "de.julielab" % "gene-mapper-experimental-base" % "1.0.0"
Groovy Grape 
@Grapes(
  @Grab(group='de.julielab', module='gene-mapper-experimental-base', version='1.0.0')
)
Apache Ivy 
<dependency org="de.julielab" name="gene-mapper-experimental-base" rev="1.0.0" />
Leiningen 
[de.julielab/gene-mapper-experimental-base "1.0.0"]
Apache Buildr 
'de.julielab:gene-mapper-experimental-base:jar:1.0.0'
Dependencies 
<parent>
  <groupId>de.julielab</groupId>
  <artifactId>julielab-gene-mapper</artifactId>
  <version>2.5.0</version>
</parent>

compile

|-- org.apache.commons:commons-lang3

|-- org.apache.commons:commons-text:1.9

|-- de.julielab:julielab-java-utilities:1.4.4

|-- org.slf4j:slf4j-api

|-- org.apache.lucene:lucene-analyzers-common:8.5.0

|-- com.google.guava:guava:30.1.1-jre

|-- de.julielab:julielab-ranklib-mallet:1.0.0

|-- de.julielab:jcore-mallet-2.0.9:2.1.0

|-- tw.edu.ntu.csie:libsvm:3.24

|-- com.sparkjava:spark-core

|-- com.google.inject:guice:5.0.1

|-- de.julielab:julie-xml-tools:0.6.2

|-- de.julielab:julielab-entity-evaluator:1.3.0

|-- org.ehcache:ehcache:3.8.1

|-- javax.cache:cache-api:1.1.1

|-- org.jetbrains:annotations:RELEASE

|-- commons-codec:commons-codec:1.13

|-- commons-io:commons-io

|-- org.junit.jupiter:junit-jupiter-engine

|-- org.assertj:assertj-core

|-- com.wcohen:com.wcohen.secondstring:0.1

test

|-- com.google.inject.extensions:guice-testlib:5.0.1