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jcore-linnaeus-species-ae

Uses the Linnaeus software (http://linnaeus.sourceforge.net/) to detect species mentions and map them to NCBI taxonomy IDs. This project contains the UIMA wrapper around the original Linnaeus software but does not include any dictionaries. Since Linnaeus works with different dictionaries (e.g. concrete species name mention recognition, species proxy/clue recognition, ...) each of the different resource has been stored in a project of its own in jcore-projects. The default mention dictionary is stored in the jcore-linneaus-species-dict project, for example.
https://github.com/JULIELab/jcore-base/tree/master/jcore-linnaeus-species-ae
BSD-2-Clause
JULIE Lab Jena, Germany
concrete been works projects software recognition detect project wrapper taxonomy around jcore ncbi mention example default does clue dict different uima linnaeus include original resource this linneaus them each with proxy contains dictionary species mentions stored sourceforge name http uses dictionaries since
Files download
File Operation
jcore-linnaeus-species-ae-2.6.1.jar download
jcore-linnaeus-species-ae-2.6.1.pom download
jcore-linnaeus-species-ae-2.6.1-sources.jar download
Apache Maven 
<dependency>
  <groupId>de.julielab</groupId>
  <artifactId>jcore-linnaeus-species-ae</artifactId>
  <version>2.6.1</version>
</dependency>
Gradle Groovy 
implementation 'de.julielab:jcore-linnaeus-species-ae:2.6.1'
Gradle Kotlin 
implementation("de.julielab:jcore-linnaeus-species-ae:2.6.1")
Scala SBT 
libraryDependencies += "de.julielab" % "jcore-linnaeus-species-ae" % "2.6.1"
Groovy Grape 
@Grapes(
  @Grab(group='de.julielab', module='jcore-linnaeus-species-ae', version='2.6.1')
)
Apache Ivy 
<dependency org="de.julielab" name="jcore-linnaeus-species-ae" rev="2.6.1" />
Leiningen 
[de.julielab/jcore-linnaeus-species-ae "2.6.1"]
Apache Buildr 
'de.julielab:jcore-linnaeus-species-ae:jar:2.6.1'
Dependencies 
<parent>
  <groupId>de.julielab</groupId>
  <artifactId>jcore-base</artifactId>
  <version>2.6.1</version>
</parent>

compile

|-- de.julielab:linnaeus:2.0-JULIELAB-1.0.0

|-- org.slf4j:slf4j-api

|-- de.julielab:jcore-types

|-- de.julielab:jcore-utilities

|-- de.julielab:jcore-descriptor-creator

|-- org.junit.jupiter:junit-jupiter-engine