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jcore-medline-db-reader

An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse MEDLINE XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the MEDLINE XML schema that was used until inclusive 2016. I.e. the root element of MEDLINE documents must be MedlineCitation and not, as it is since 2017, PubmedArticle.
https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-db-reader
BSD-2-Clause
JULIE Lab, Germany
schema pubmedarticle documents reader mapper retrieved used jcore medlinecitation that database medline postgresql root from instantiation element inclusive expected format parse follow 2017 2016 retrieve uses until must since
Files download
File Operation
jcore-medline-db-reader-2.6.0.jar download
jcore-medline-db-reader-2.6.0.pom download
jcore-medline-db-reader-2.6.0-sources.jar download
Apache Maven 
<dependency>
  <groupId>de.julielab</groupId>
  <artifactId>jcore-medline-db-reader</artifactId>
  <version>2.6.0</version>
</dependency>
Gradle Groovy 
implementation 'de.julielab:jcore-medline-db-reader:2.6.0'
Gradle Kotlin 
implementation("de.julielab:jcore-medline-db-reader:2.6.0")
Scala SBT 
libraryDependencies += "de.julielab" % "jcore-medline-db-reader" % "2.6.0"
Groovy Grape 
@Grapes(
  @Grab(group='de.julielab', module='jcore-medline-db-reader', version='2.6.0')
)
Apache Ivy 
<dependency org="de.julielab" name="jcore-medline-db-reader" rev="2.6.0" />
Leiningen 
[de.julielab/jcore-medline-db-reader "2.6.0"]
Apache Buildr 
'de.julielab:jcore-medline-db-reader:jar:2.6.0'
Dependencies 
<parent>
  <groupId>de.julielab</groupId>
  <artifactId>jcore-projects</artifactId>
  <version>2.6.0</version>
</parent>

compile

|-- de.julielab:jcore-xml-db-reader:2.6.3

|-- de.julielab:jcore-descriptor-creator