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jcore-pubmed-db-reader

An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse PubMed XML from a PostgreSQL database. The XML format of retrieved documents is expected to follow the PubMed/MEDLINE XML schema that was used beginning from 2017. I.e. the root document of a document must be PubmedArticle and not, as it was for MEDLINE until 2017, MedlineCitation.
https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-db-reader
BSD-2-Clause
JULIE Lab, Germany
schema beginning pubmedarticle documents reader document mapper retrieved used jcore medlinecitation that pubmed database postgresql medline root from instantiation expected format parse follow 2017 retrieve uses must until
Files download
File Operation
jcore-pubmed-db-reader-2.6.1.jar download
jcore-pubmed-db-reader-2.6.1.pom download
jcore-pubmed-db-reader-2.6.1-sources.jar download
Apache Maven 
<dependency>
  <groupId>de.julielab</groupId>
  <artifactId>jcore-pubmed-db-reader</artifactId>
  <version>2.6.1</version>
</dependency>
Gradle Groovy 
implementation 'de.julielab:jcore-pubmed-db-reader:2.6.1'
Gradle Kotlin 
implementation("de.julielab:jcore-pubmed-db-reader:2.6.1")
Scala SBT 
libraryDependencies += "de.julielab" % "jcore-pubmed-db-reader" % "2.6.1"
Groovy Grape 
@Grapes(
  @Grab(group='de.julielab', module='jcore-pubmed-db-reader', version='2.6.1')
)
Apache Ivy 
<dependency org="de.julielab" name="jcore-pubmed-db-reader" rev="2.6.1" />
Leiningen 
[de.julielab/jcore-pubmed-db-reader "2.6.1"]
Apache Buildr 
'de.julielab:jcore-pubmed-db-reader:jar:2.6.1'
Dependencies 
<parent>
  <groupId>de.julielab</groupId>
  <artifactId>jcore-projects</artifactId>
  <version>2.6.0</version>
</parent>

compile

|-- de.julielab:jcore-xml-db-reader

|-- de.julielab:jcore-descriptor-creator

|-- org.junit.jupiter:junit-jupiter-engine