g

gene-species-assignment

The task that is the subject of this project is the assignment of taxonomy identifiers to mentions of genes in text documents. The base for the assignment are mostly the mentions of species in the same document.
BSD-2-Clause
JULIE Lab Jena, Germany
Erik Faessler
mostly genes documents subject assignment identifiers document this project taxonomy that task same species mentions text base
Files download
File Operation
gene-species-assignment-1.0.0.jar download
gene-species-assignment-1.0.0.pom download
gene-species-assignment-1.0.0-sources.jar download
Apache Maven 
<dependency>
  <groupId>de.julielab</groupId>
  <artifactId>gene-species-assignment</artifactId>
  <version>1.0.0</version>
</dependency>
Gradle Groovy 
implementation 'de.julielab:gene-species-assignment:1.0.0'
Gradle Kotlin 
implementation("de.julielab:gene-species-assignment:1.0.0")
Scala SBT 
libraryDependencies += "de.julielab" % "gene-species-assignment" % "1.0.0"
Groovy Grape 
@Grapes(
  @Grab(group='de.julielab', module='gene-species-assignment', version='1.0.0')
)
Apache Ivy 
<dependency org="de.julielab" name="gene-species-assignment" rev="1.0.0" />
Leiningen 
[de.julielab/gene-species-assignment "1.0.0"]
Apache Buildr 
'de.julielab:gene-species-assignment:jar:1.0.0'
Dependencies 
<parent>
  <groupId>de.julielab</groupId>
  <artifactId>julielab-gene-mapper</artifactId>
  <version>2.5.0</version>
</parent>

compile

|-- de.julielab:gene-mapper-experimental-base:1.0.0

|-- de.julielab:gene-candidate-retrieval:2.5.0

|-- de.julielab:jcore-types:2.6.0

|-- org.junit.jupiter:junit-jupiter-engine

|-- org.assertj:assertj-core

|-- org.apache.lucene:lucene-suggest

|-- org.apache.uima:ruta-core:2.8.1

|-- de.julielab:jcore-utilities

provided

|-- ch.qos.logback:logback-classic

|-- de.julielab:julielab-smac-utilities:1.0.0

test

|-- org.junit.platform:junit-platform-launcher:1.6.2

|-- ch.qos.logback:logback-classic

|-- org.mockito:mockito-core:3.11.2